PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031787
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 240aa    MW: 26063.3 Da    PI: 6.5021
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031787genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.91.2e-314107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q ++e
  DCAR_031787   4 SCNGCRVLRKGCTDDCSIRPCLqwiasPESQAHATVFLAKFYGRAGLMNLINAGPDHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGKWQLCQNAVE 101
                  6************************************************************************************************9 PP

       DUF260  94 lallke 99 
                  ++l+++
  DCAR_031787 102 AVLRGD 107
                  988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.7943109IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTDDCS IRPCLQWIAS PESQAHATVF LAKFYGRAGL MNLINAGPDH  60
LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GKWQLCQNAV EAVLRGDPIT QVVAIDAAEA  120
NNGPPLKAYD IRHVHKEENN NANDLHRVRN RCKFKRPGKE ANASRSHESS LSHQSEAVMN  180
GEGESRETES FVTAETADGS PGLFGAEPQG LGAGEDHKEA ESDEIELELT LGFKCGRSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099556.11e-114PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8862e-94LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A103Y0691e-111A0A103Y069_CYNCS; Lateral organ boundaries domain-containing protein
STRINGGLYMA19G06280.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-86LOB domain-containing protein 41